/EXTERNAL BLUEPRINT/mapping_coverage/K006420_14_lane_gembs
BACK
SAMPLE K006420_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1170998738 |
100% |
107688988266 |
100% |
| Mapped |
1159140949 |
98.99 % |
106491351577 |
98.89 % |
| Passed |
994336763 |
84.91 % |
89846128791 |
83.43 % |
| NotPassed |
164804186 |
14.07 % |
16645222786 |
15.46 % |
| |
|
|
|
|
| LowMAPQ |
144235544 |
12.32 % |
14567789944 |
13.53 % |
| MateUnmapped |
11857789 |
1.01 % |
1197636689 |
1.11 % |
| Duplicate |
3541179 |
0.30 % |
357659079 |
0.33 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
5234 |
0.00 % |
528634 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17022219 |
1.45 % |
1719244119 |
1.60 % |
| Unmapped |
11857789 |
1.01 % |
1197636689 |
1.11 % |
Base Level Counts
| Bases |
# |
% |
| Total |
100419198894 |
100% |
| Passed |
84306020559 |
83.95 % |
| Trimmed |
4396495830 |
4.38 % |
| Clipped |
122326020 |
0.12 % |
| Overlapping |
10450744083 |
10.41 % |
| LowQuality |
1143612402 |
1.14 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |