/EXTERNAL BLUEPRINT/methylation/K006420_14_lane_gembs

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SAMPLE K006420_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26828224 23624524 88.06 %
NonRefCpG 264110 192487 72.88 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006420_14_lane_gembs_coverage_refCpG.png ./IMG//K006420_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006420_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006420_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006420_14_lane_gembs_quality_refcpg.png ./IMG//K006420_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006420_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9465696 17.90 % 8197806 16.85 % 78435 15.60 % 50731 12.51 %
Intermediate (0.3-0.7) 9415134 17.80 % 8147280 16.75 % 102462 20.38 % 72225 17.80 %
Methylated (0.7-1) 34000628 64.30 % 32303264 66.40 % 321860 64.02 % 282717 69.69 %
Median Methylation 0.830 0.840 0.820 0.850