/EXTERNAL BLUEPRINT/K006362_15_lane_gembs/S004AV.Bisulfite-Seq.DNA_Methylation.EGAX00001301749_15

BACK

SAMPLE K006362_15_lane_gembs LANE S004AV.Bisulfite-Seq.DNA_Methylation.EGAX00001301749_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1049071606 100.00 % 524535803 100.00 % 524535803 100.00 %
General Reads 1004561846 95.76 % 503485446 95.99 % 501076400 95.53 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 18398578 1.75 % 9211329 1.76 % 9187249 1.75 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26111182 2.49 % 11839028 2.26 % 14272154 2.72 %
Bisulfite_reads C2T 540650293 51.54 % 271019358 51.67 % 269630935 51.40 %
Bisulfite_reads G2A 482310131 45.97 % 241677417 46.07 % 240632714 45.88 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 399291521
Average Unique 76.12 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 37476977404 35.02 % 15255611210 28.51 % 22221366194 41.53 %
Base Counts Overall C 15539010541 14.52 % 801734130 1.50 % 14737276411 27.54 %
Base Counts Overall G 15614879490 14.59 % 14831086605 27.72 % 783792885 1.46 %
Base Counts Overall T 37287787290 34.85 % 22085624572 41.28 % 15202162718 28.41 %
Base Counts Overall N 1086649087 1.02 % 528595389 0.99 % 558053698 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990057061825924
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 492824318



Mapping Quality

Mapping Quality Histogram
S004AV.Bisulfite-Seq.DNA_Methylation.EGAX00001301749_15.mapq.png



Read Length

Read Length Reads
101 524535803
101 524535803



Insert Size Plot

Insert Size Histogram
S004AV.Bisulfite-Seq.DNA_Methylation.EGAX00001301749_15.isize.png