/EXTERNAL BLUEPRINT/mapping_coverage/K006362_15_lane_gembs
BACK
SAMPLE K006362_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
994937724 |
100% |
86571093129 |
100% |
| Mapped |
985553447 |
99.06 % |
85623281152 |
98.91 % |
| Passed |
769547778 |
77.35 % |
63806708583 |
73.70 % |
| NotPassed |
216005669 |
21.71 % |
21816572569 |
25.20 % |
| |
|
|
|
|
| LowMAPQ |
189671090 |
19.06 % |
19156780090 |
22.13 % |
| MateUnmapped |
9384277 |
0.94 % |
947811977 |
1.09 % |
| Duplicate |
9643314 |
0.97 % |
973974714 |
1.13 % |
| BadOrientation |
50 |
0.00 % |
5050 |
0.00 % |
| LargeInsertSize |
21938 |
0.00 % |
2215738 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16669277 |
1.68 % |
1683596977 |
1.94 % |
| Unmapped |
9384277 |
0.94 % |
947811977 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
77719773710 |
100% |
| Passed |
60116188043 |
77.35 % |
| Trimmed |
3230165533 |
4.16 % |
| Clipped |
72994177 |
0.09 % |
| Overlapping |
13840070950 |
17.81 % |
| LowQuality |
460355007 |
0.59 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |