/EXTERNAL BLUEPRINT/methylation/K006362_15_lane_gembs

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SAMPLE K006362_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26356361 17726816 67.26 %
NonRefCpG 326564 125878 38.55 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006362_15_lane_gembs_coverage_refCpG.png ./IMG//K006362_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006362_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006362_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006362_15_lane_gembs_quality_refcpg.png ./IMG//K006362_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006362_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6000006 13.39 % 4099286 11.92 % 99906 18.93 % 24886 8.98 %
Intermediate (0.3-0.7) 9230270 20.60 % 5386974 15.66 % 143068 27.11 % 55414 19.99 %
Methylated (0.7-1) 29574120 66.01 % 24906127 72.42 % 284730 53.96 % 196946 71.04 %
Median Methylation 0.810 0.840 0.730 0.830