/EXTERNAL BLUEPRINT/K006385_K006398_19_lane_gembs

BACK

SAMPLE K006385_K006398_19_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2051680852 100.00 % 1025840426 100.00 % 1025840426 100.00 %
General Reads 1948901528 94.99 % 977415411 95.28 % 971486117 94.70 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 50419270 2.46 % 25250148 2.46 % 25169122 2.45 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 52360054 2.55 % 23174867 2.26 % 29185187 2.85 %
Bisulfite_reads C2T 1047340889 51.05 % 525270987 51.20 % 522069902 50.89 %
Bisulfite_reads G2A 951979909 46.40 % 477394572 46.54 % 474585337 46.26 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 811261001
Average Unique 79.08 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 76177868725 36.40 % 30276557633 28.94 % 45901311092 43.87 %
Base Counts Overall C 27506269501 13.14 % 1547371545 1.48 % 25958897956 24.81 %
Base Counts Overall G 27749078921 13.26 % 26241825418 25.08 % 1507253503 1.44 %
Base Counts Overall T 75708343268 36.18 % 45518706995 43.50 % 30189636273 28.85 %
Base Counts Overall N 2129886489 1.02 % 1051261861 1.00 % 1078624628 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.999029554951924
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 967518399



Mapping Quality

Mapping Quality Histogram
K006385_K006398_19_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006385_K006398_19_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
UMCG00010.Bisulfite-Seq.DNA_Methylation.EGAX00001345070_8
UMCG00010.Bisulfite-Seq.DNA_Methylation.EGAX00001345056_11