/EXTERNAL BLUEPRINT/K006385_K006398_19_lane_gembs/UMCG00010.Bisulfite-Seq.DNA_Methylation.EGAX00001345056_11

BACK

SAMPLE K006385_K006398_19_lane_gembs LANE UMCG00010.Bisulfite-Seq.DNA_Methylation.EGAX00001345056_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1201313870 100.00 % 600656935 100.00 % 600656935 100.00 %
General Reads 1118995953 93.15 % 560992774 93.40 % 558003179 92.90 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 44823508 3.73 % 22445877 3.74 % 22377631 3.73 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 37494409 3.12 % 17218284 2.87 % 20276125 3.38 %
Bisulfite_reads C2T 619874856 51.60 % 310800242 51.74 % 309074614 51.46 %
Bisulfite_reads G2A 543944605 45.28 % 272638409 45.39 % 271306196 45.17 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 455911311
Average Unique 75.90 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 42559788065 34.73 % 17373218130 28.36 % 25186569935 41.11 %
Base Counts Overall C 18118884643 14.79 % 1115865573 1.82 % 17003019070 27.75 %
Base Counts Overall G 18291360639 14.93 % 17195793502 28.07 % 1095567137 1.79 %
Base Counts Overall T 42314959911 34.53 % 24971981190 40.76 % 17342978721 28.31 %
Base Counts Overall N 1249021482 1.02 % 610148975 1.00 % 638872507 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990390022985249
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 560395979



Mapping Quality

Mapping Quality Histogram
UMCG00010.Bisulfite-Seq.DNA_Methylation.EGAX00001345056_11.mapq.png



Read Length

Read Length Reads
101 600656935
101 600656935



Insert Size Plot

Insert Size Histogram
UMCG00010.Bisulfite-Seq.DNA_Methylation.EGAX00001345056_11.isize.png