/EXTERNAL BLUEPRINT/K006385_K006398_19_lane_gembs/UMCG00010.Bisulfite-Seq.DNA_Methylation.EGAX00001345070_8

BACK

SAMPLE K006385_K006398_19_lane_gembs LANE UMCG00010.Bisulfite-Seq.DNA_Methylation.EGAX00001345070_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 850366982 100.00 % 425183491 100.00 % 425183491 100.00 %
General Reads 829905575 97.59 % 416422637 97.94 % 413482938 97.25 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5595762 0.66 % 2804271 0.66 % 2791491 0.66 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14865645 1.75 % 5956583 1.40 % 8909062 2.10 %
Bisulfite_reads C2T 427466033 50.27 % 214470745 50.44 % 212995288 50.09 %
Bisulfite_reads G2A 408035304 47.98 % 204756163 48.16 % 203279141 47.81 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 355349690
Average Unique 83.58 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33618080660 38.76 % 12903339503 29.75 % 20714741157 47.76 %
Base Counts Overall C 9387384858 10.82 % 431505972 0.99 % 8955878886 20.65 %
Base Counts Overall G 9457718282 10.90 % 9046031916 20.86 % 411686366 0.95 %
Base Counts Overall T 33393383357 38.50 % 20546725805 47.38 % 12846657552 29.62 %
Base Counts Overall N 880865007 1.02 % 441112886 1.02 % 439752121 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989419116671017
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 407122420



Mapping Quality

Mapping Quality Histogram
UMCG00010.Bisulfite-Seq.DNA_Methylation.EGAX00001345070_8.mapq.png



Read Length

Read Length Reads
101 425183491
101 425183491



Insert Size Plot

Insert Size Histogram
UMCG00010.Bisulfite-Seq.DNA_Methylation.EGAX00001345070_8.isize.png