/EXTERNAL BLUEPRINT/mapping_coverage/K006385_K006398_19_lane_gembs
BACK
SAMPLE K006385_K006398_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1924753049 |
100% |
173288739264 |
100% |
| Mapped |
1907223638 |
99.09 % |
171518268753 |
98.98 % |
| Passed |
1539684703 |
79.99 % |
134396836318 |
77.56 % |
| NotPassed |
367538935 |
19.10 % |
37121432435 |
21.42 % |
| |
|
|
|
|
| LowMAPQ |
312887972 |
16.26 % |
31601685172 |
18.24 % |
| MateUnmapped |
17529411 |
0.91 % |
1770470511 |
1.02 % |
| Duplicate |
24198872 |
1.26 % |
2444086072 |
1.41 % |
| BadOrientation |
68 |
0.00 % |
6868 |
0.00 % |
| LargeInsertSize |
50268 |
0.00 % |
5077068 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
30401755 |
1.58 % |
3070577255 |
1.77 % |
| Unmapped |
17529411 |
0.91 % |
1770470511 |
1.02 % |
Base Level Counts
| Bases |
# |
% |
| Total |
155497257103 |
100% |
| Passed |
126305630560 |
81.23 % |
| Trimmed |
6678779676 |
4.30 % |
| Clipped |
161575150 |
0.10 % |
| Overlapping |
20938845635 |
13.47 % |
| LowQuality |
1412426082 |
0.91 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |