/EXTERNAL BLUEPRINT/methylation/K006385_K006398_19_lane_gembs
BACK
SAMPLE K006385_K006398_19_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26909165 |
24664171 |
91.66 % |
| NonRefCpG |
255039 |
194898 |
76.42 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6380340 |
12.01 % |
5795265 |
11.54 % |
40767 |
8.41 % |
22701 |
5.62 % |
| Intermediate (0.3-0.7) |
5776289 |
10.87 % |
5051206 |
10.06 % |
67236 |
13.86 % |
44532 |
11.03 % |
| Methylated (0.7-1) |
40967742 |
77.12 % |
39355472 |
78.39 % |
376984 |
77.73 % |
336571 |
83.35 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.900 |
|
0.900 |
|
0.890 |
|
0.910 |
|