/EXTERNAL BLUEPRINT/K006322_8_lane_gembs

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SAMPLE K006322_8_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 329337224 100.00 % 164668612 100.00 % 164668612 100.00 %
General Reads 323335790 98.18 % 163190074 99.10 % 160145716 97.25 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2 0.00 % 1 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6001432 1.82 % 1478537 0.90 % 4522895 2.75 %
Bisulfite_reads C2T 165865816 50.36 % 83684336 50.82 % 82181480 49.91 %
Bisulfite_reads G2A 157469976 47.81 % 79505739 48.28 % 77964237 47.35 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 133981566
Average Unique 81.36 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12993422660 38.68 % 5847550803 34.81 % 7145871857 42.54 %
Base Counts Overall C 3523431136 10.49 % 166504373 0.99 % 3356926763 19.99 %
Base Counts Overall G 3515294275 10.46 % 3321948696 19.78 % 193345579 1.15 %
Base Counts Overall T 13176120890 39.22 % 7293591609 43.42 % 5882529281 35.02 %
Base Counts Overall N 384127887 1.14 % 166602943 0.99 % 217524944 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 153632082



Mapping Quality

Mapping Quality Histogram
K006322_8_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006322_8_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
299.2.Bisulfite-Seq.DNA_Methylation.EGAX00001223319_8