/EXTERNAL BLUEPRINT/mapping_coverage/K006322_8_lane_gembs
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SAMPLE K006322_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
317927256 |
100% |
30741158895 |
100% |
| Mapped |
313091046 |
98.48 % |
30252701685 |
98.41 % |
| Passed |
258737924 |
81.38 % |
24763036363 |
80.55 % |
| NotPassed |
54353122 |
17.10 % |
5489665322 |
17.86 % |
| |
|
|
|
|
| LowMAPQ |
39324410 |
12.37 % |
3971765410 |
12.92 % |
| MateUnmapped |
4836210 |
1.52 % |
488457210 |
1.59 % |
| Duplicate |
5411242 |
1.70 % |
546535442 |
1.78 % |
| BadOrientation |
4 |
0.00 % |
404 |
0.00 % |
| LargeInsertSize |
2160 |
0.00 % |
218160 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
9615306 |
3.02 % |
971145906 |
3.16 % |
| Unmapped |
4836210 |
1.52 % |
488457210 |
1.59 % |
Base Level Counts
| Bases |
# |
% |
| Total |
26067361185 |
100% |
| Passed |
23175680509 |
88.91 % |
| Trimmed |
1209452511 |
4.64 % |
| Clipped |
54754141 |
0.21 % |
| Overlapping |
1249570681 |
4.79 % |
| LowQuality |
377903343 |
1.45 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |