/EXTERNAL BLUEPRINT/methylation/K006322_8_lane_gembs

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SAMPLE K006322_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 23426253 4323765 18.46 %
NonRefCpG 364158 36734 10.09 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006322_8_lane_gembs_coverage_refCpG.png ./IMG//K006322_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006322_8_lane_gembs_coverage_nonRefCpG.png ./IMG//K006322_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006322_8_lane_gembs_quality_refcpg.png ./IMG//K006322_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006322_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3376771 9.66 % 420211 4.35 % 148060 26.04 % 15041 12.78 %
Intermediate (0.3-0.7) 10450733 29.90 % 1952769 20.21 % 176510 31.04 % 28711 24.40 %
Methylated (0.7-1) 21127404 60.44 % 7290575 75.44 % 244110 42.93 % 73921 62.82 %
Median Methylation 0.770 0.860 0.620 0.800