/EXTERNAL BLUEPRINT/K006382_K006412_20_lane_gembs

BACK

SAMPLE K006382_K006412_20_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2006976318 100.00 % 1003488159 100.00 % 1003488159 100.00 %
General Reads 1936032940 96.47 % 971943557 96.86 % 964089383 96.07 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 23636975 1.18 % 11856253 1.18 % 11780722 1.17 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 47306403 2.36 % 19688349 1.96 % 27618054 2.75 %
Bisulfite_reads C2T 1025964446 51.12 % 515071004 51.33 % 510893442 50.91 %
Bisulfite_reads G2A 933705469 46.52 % 468728806 46.71 % 464976663 46.34 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 790272905
Average Unique 78.75 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 75280119129 36.77 % 29527609352 28.85 % 45752509777 44.70 %
Base Counts Overall C 26043288628 12.72 % 1128952108 1.10 % 24914336520 24.34 %
Base Counts Overall G 26370466591 12.88 % 25262776779 24.68 % 1107689812 1.08 %
Base Counts Overall T 74943474380 36.61 % 45423289941 44.38 % 29520184439 28.84 %
Base Counts Overall N 2074235708 1.01 % 1013164038 0.99 % 1061071670 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991066485517132
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 948658707



Mapping Quality

Mapping Quality Histogram
K006382_K006412_20_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006382_K006412_20_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S00W8Y.Bisulfite-Seq.DNA_Methylation.EGAX00001349849_9
S00W8Y.Bisulfite-Seq.DNA_Methylation.EGAX00001344722_11