/EXTERNAL BLUEPRINT/K006382_K006412_20_lane_gembs/S00W8Y.Bisulfite-Seq.DNA_Methylation.EGAX00001344722_11

BACK

SAMPLE K006382_K006412_20_lane_gembs LANE S00W8Y.Bisulfite-Seq.DNA_Methylation.EGAX00001344722_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1164983636 100.00 % 582491818 100.00 % 582491818 100.00 %
General Reads 1113015586 95.54 % 558596752 95.90 % 554418834 95.18 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 20589353 1.77 % 10327190 1.77 % 10262163 1.76 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 31378697 2.69 % 13567876 2.33 % 17810821 3.06 %
Bisulfite_reads C2T 602331118 51.70 % 302322657 51.90 % 300008461 51.50 %
Bisulfite_reads G2A 531273821 45.60 % 266601285 45.77 % 264672536 45.44 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 442299450
Average Unique 75.93 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41940771168 35.30 % 16728429273 28.16 % 25212341895 42.43 %
Base Counts Overall C 16889084506 14.21 % 793328149 1.34 % 16095756357 27.09 %
Base Counts Overall G 17111332266 14.40 % 16325975852 27.48 % 785356414 1.32 %
Base Counts Overall T 41705796753 35.10 % 24978241423 42.04 % 16727555330 28.15 %
Base Counts Overall N 1181346179 0.99 % 588190739 0.99 % 593155440 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990812430032882
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 546973506



Mapping Quality

Mapping Quality Histogram
S00W8Y.Bisulfite-Seq.DNA_Methylation.EGAX00001344722_11.mapq.png



Read Length

Read Length Reads
101 582491818
101 582491818



Insert Size Plot

Insert Size Histogram
S00W8Y.Bisulfite-Seq.DNA_Methylation.EGAX00001344722_11.isize.png