/EXTERNAL BLUEPRINT/methylation/K006382_K006412_20_lane_gembs
BACK
SAMPLE K006382_K006412_20_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26912987 |
23790361 |
88.40 % |
| NonRefCpG |
242215 |
171852 |
70.95 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
10829667 |
20.39 % |
9708004 |
19.73 % |
89183 |
19.27 % |
59679 |
16.15 % |
| Intermediate (0.3-0.7) |
14364497 |
27.05 % |
12852512 |
26.12 % |
147576 |
31.89 % |
113381 |
30.68 % |
| Methylated (0.7-1) |
27912902 |
52.56 % |
26643644 |
54.15 % |
226066 |
48.84 % |
196540 |
53.18 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.720 |
|
0.730 |
|
0.680 |
|
0.720 |
|