/EXTERNAL BLUEPRINT/K010525_1_lane_gembs

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SAMPLE K010525_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 309068764 100.00 % 154534382 100.00 % 154534382 100.00 %
General Reads 304490286 98.52 % 153472379 99.31 % 151017907 97.72 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2 0.00 % 0 0.00 % 2 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4578476 1.48 % 1062003 0.69 % 3516473 2.28 %
Bisulfite_reads C2T 155086555 50.18 % 78142637 50.57 % 76943918 49.79 %
Bisulfite_reads G2A 149403733 48.34 % 75329742 48.75 % 74073991 47.93 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 128657934
Average Unique 83.26 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12216219808 38.75 % 5465714550 34.68 % 6750505258 42.83 %
Base Counts Overall C 3284361895 10.42 % 156563941 0.99 % 3127797954 19.84 %
Base Counts Overall G 3284670834 10.42 % 3107220803 19.71 % 177450031 1.13 %
Base Counts Overall T 12378460416 39.27 % 6876655861 43.63 % 5501804555 34.90 %
Base Counts Overall N 361300975 1.15 % 156351809 0.99 % 204949166 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 146110308



Mapping Quality

Mapping Quality Histogram
K010525_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K010525_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010525_1798767_2