/EXTERNAL BLUEPRINT/mapping_coverage/K010525_1_lane_gembs
BACK
SAMPLE K010525_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
298600617 |
100% |
28832403578 |
100% |
| Mapped |
294647160 |
98.68 % |
28433104421 |
98.62 % |
| Passed |
247009861 |
82.72 % |
23621737222 |
81.93 % |
| NotPassed |
47637299 |
15.95 % |
4811367199 |
16.69 % |
| |
|
|
|
|
| LowMAPQ |
35000452 |
11.72 % |
3535045652 |
12.26 % |
| MateUnmapped |
3953457 |
1.32 % |
399299157 |
1.38 % |
| Duplicate |
5893554 |
1.97 % |
595248954 |
2.06 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
1398 |
0.00 % |
141198 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
6741885 |
2.26 % |
680930385 |
2.36 % |
| Unmapped |
3953457 |
1.32 % |
399299157 |
1.38 % |
Base Level Counts
| Bases |
# |
% |
| Total |
24884443327 |
100% |
| Passed |
22129674287 |
88.93 % |
| Trimmed |
1153933335 |
4.64 % |
| Clipped |
49916804 |
0.20 % |
| Overlapping |
1212789301 |
4.87 % |
| LowQuality |
338129600 |
1.36 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |