/EXTERNAL BLUEPRINT/methylation/K010525_1_lane_gembs

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SAMPLE K010525_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 23431108 3990858 17.03 %
NonRefCpG 368417 34037 9.24 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010525_1_lane_gembs_coverage_refCpG.png ./IMG//K010525_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010525_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010525_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010525_1_lane_gembs_quality_refcpg.png ./IMG//K010525_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010525_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3314168 9.42 % 375283 4.12 % 149945 25.96 % 13714 12.38 %
Intermediate (0.3-0.7) 10568540 30.03 % 1849772 20.33 % 179738 31.11 % 26877 24.27 %
Methylated (0.7-1) 21305739 60.55 % 6874644 75.55 % 247997 42.93 % 70162 63.35 %
Median Methylation 0.770 0.860 0.620 0.800