/EXTERNAL BLUEPRINT/mapping_coverage/K010374_K010526_2_lane_gembs
BACK
SAMPLE K010374_K010526_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
327381128 |
100% |
28860978443 |
100% |
| Mapped |
323908802 |
98.94 % |
28510273517 |
98.78 % |
| Passed |
260645572 |
79.62 % |
22120687287 |
76.65 % |
| NotPassed |
63263230 |
19.32 % |
6389586230 |
22.14 % |
| |
|
|
|
|
| LowMAPQ |
57223308 |
17.48 % |
5779554108 |
20.03 % |
| MateUnmapped |
3472326 |
1.06 % |
350704926 |
1.22 % |
| Duplicate |
704812 |
0.22 % |
71186012 |
0.25 % |
| BadOrientation |
14 |
0.00 % |
1414 |
0.00 % |
| LargeInsertSize |
7898 |
0.00 % |
797698 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
5327198 |
1.63 % |
538046998 |
1.86 % |
| Unmapped |
3472326 |
1.06 % |
350704926 |
1.22 % |
Base Level Counts
| Bases |
# |
% |
| Total |
26295682593 |
100% |
| Passed |
20778185703 |
79.02 % |
| Trimmed |
1107696543 |
4.21 % |
| Clipped |
28056346 |
0.11 % |
| Overlapping |
4146938960 |
15.77 % |
| LowQuality |
234805041 |
0.89 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |