/EXTERNAL BLUEPRINT/methylation/K010374_K010526_2_lane_gembs
BACK
SAMPLE K010374_K010526_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26155256 |
7374015 |
28.19 % |
| NonRefCpG |
408510 |
44855 |
10.98 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
7972866 |
17.28 % |
2369705 |
12.65 % |
235000 |
32.59 % |
26973 |
16.82 % |
| Intermediate (0.3-0.7) |
13925199 |
30.19 % |
4060762 |
21.67 % |
233133 |
32.33 % |
42430 |
26.46 % |
| Methylated (0.7-1) |
24229365 |
52.53 % |
12306996 |
65.68 % |
252967 |
35.08 % |
90946 |
56.72 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.720 |
|
0.810 |
|
0.520 |
|
0.760 |
|