/EXTERNAL BLUEPRINT/methylation/K010527_1_lane_gembs

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SAMPLE K010527_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24141607 4536532 18.79 %
NonRefCpG 370508 37880 10.22 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010527_1_lane_gembs_coverage_refCpG.png ./IMG//K010527_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010527_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010527_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010527_1_lane_gembs_quality_refcpg.png ./IMG//K010527_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010527_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3557904 9.49 % 404446 3.87 % 153996 25.76 % 14178 11.52 %
Intermediate (0.3-0.7) 11043936 29.46 % 2095188 20.04 % 183343 30.67 % 29323 23.83 %
Methylated (0.7-1) 22884649 61.05 % 7954454 76.09 % 260529 43.58 % 79551 64.65 %
Median Methylation 0.780 0.860 0.630 0.810