/EXTERNAL BLUEPRINT/methylation/K006364_20_lane_gembs

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SAMPLE K006364_20_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26786710 20105310 75.06 %
NonRefCpG 367762 150266 40.86 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006364_20_lane_gembs_coverage_refCpG.png ./IMG//K006364_20_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006364_20_lane_gembs_coverage_nonRefCpG.png ./IMG//K006364_20_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006364_20_lane_gembs_quality_refcpg.png ./IMG//K006364_20_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006364_20_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7210256 14.57 % 5368350 13.05 % 169412 25.85 % 48272 12.92 %
Intermediate (0.3-0.7) 9838397 19.88 % 6694484 16.27 % 166859 25.46 % 79904 21.39 %
Methylated (0.7-1) 32438462 65.55 % 29070908 70.67 % 319035 48.68 % 245317 65.68 %
Median Methylation 0.820 0.850 0.680 0.820