/EXTERNAL BLUEPRINT/K006368_20_lane_gembs

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SAMPLE K006368_20_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1300866402 100.00 % 650433201 100.00 % 650433201 100.00 %
General Reads 1234724362 94.92 % 620559793 95.41 % 614164569 94.42 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 17727162 1.36 % 8888702 1.37 % 8838460 1.36 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 48414878 3.72 % 20984706 3.23 % 27430172 4.22 %
Bisulfite_reads C2T 665873614 51.19 % 334556435 51.44 % 331317179 50.94 %
Bisulfite_reads G2A 586577910 45.09 % 294892060 45.34 % 291685850 44.84 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 284200951
Average Unique 43.69 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 46779797917 35.26 % 17938258340 27.04 % 28841539577 43.47 %
Base Counts Overall C 18985311568 14.31 % 1334779316 2.01 % 17650532252 26.60 %
Base Counts Overall G 18989540739 14.31 % 17822922440 26.86 % 1166618299 1.76 %
Base Counts Overall T 46614132518 35.13 % 28592515135 43.10 % 18021617383 27.16 %
Base Counts Overall N 1319590262 0.99 % 655711271 0.99 % 663878991 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989957004323082
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 502946643



Mapping Quality

Mapping Quality Histogram
K006368_20_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006368_20_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
NC11_83.Bisulfite-Seq.DNA_Methylation.EGAX00001317024