/EXTERNAL BLUEPRINT/mapping_coverage/K006368_20_lane_gembs
BACK
SAMPLE K006368_20_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1223859847 |
100% |
112994647602 |
100% |
| Mapped |
1201054512 |
98.14 % |
110691308767 |
97.96 % |
| Passed |
556989290 |
45.51 % |
45640721345 |
40.39 % |
| NotPassed |
644065222 |
52.63 % |
65050587422 |
57.57 % |
| |
|
|
|
|
| LowMAPQ |
465817720 |
38.06 % |
47047589720 |
41.64 % |
| MateUnmapped |
22805335 |
1.86 % |
2303338835 |
2.04 % |
| Duplicate |
10960619 |
0.90 % |
1107022519 |
0.98 % |
| BadOrientation |
68 |
0.00 % |
6868 |
0.00 % |
| LargeInsertSize |
450592 |
0.04 % |
45509792 |
0.04 % |
| |
|
|
|
|
| NotCorrectlyAligned |
166836223 |
13.63 % |
16850458523 |
14.91 % |
| Unmapped |
22805335 |
1.86 % |
2303338835 |
2.04 % |
Base Level Counts
| Bases |
# |
% |
| Total |
56230691419 |
100% |
| Passed |
43044307572 |
76.55 % |
| Trimmed |
2286766649 |
4.07 % |
| Clipped |
350376736 |
0.62 % |
| Overlapping |
10239593338 |
18.21 % |
| LowQuality |
309647124 |
0.55 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |