/EXTERNAL BLUEPRINT/K006395_K006408_20_lane_gembs/UMCG00023.Bisulfite-Seq.DNA_Methylation.EGAX00001345066_11

BACK

SAMPLE K006395_K006408_20_lane_gembs LANE UMCG00023.Bisulfite-Seq.DNA_Methylation.EGAX00001345066_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1153688602 100.00 % 576844301 100.00 % 576844301 100.00 %
General Reads 1094487105 94.87 % 548670004 95.12 % 545817101 94.62 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 31743656 2.75 % 15901349 2.76 % 15842307 2.75 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27457841 2.38 % 12272948 2.13 % 15184893 2.63 %
Bisulfite_reads C2T 593617909 51.45 % 297601425 51.59 % 296016484 51.32 %
Bisulfite_reads G2A 532612852 46.17 % 266969928 46.28 % 265642924 46.05 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 453169610
Average Unique 78.56 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41467053196 35.24 % 16560196545 28.15 % 24906856651 42.33 %
Base Counts Overall C 16846640121 14.32 % 938726410 1.60 % 15907913711 27.04 %
Base Counts Overall G 16984657754 14.43 % 16063964014 27.30 % 920693740 1.56 %
Base Counts Overall T 41180006360 34.99 % 24689824565 41.96 % 16490181795 28.03 %
Base Counts Overall N 1197879973 1.02 % 585407168 0.99 % 612472805 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991928131084694
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 545079705



Mapping Quality

Mapping Quality Histogram
UMCG00023.Bisulfite-Seq.DNA_Methylation.EGAX00001345066_11.mapq.png



Read Length

Read Length Reads
101 576844301
101 576844301



Insert Size Plot

Insert Size Histogram
UMCG00023.Bisulfite-Seq.DNA_Methylation.EGAX00001345066_11.isize.png