/EXTERNAL BLUEPRINT/K006395_K006408_20_lane_gembs/UMCG00023.Bisulfite-Seq.DNA_Methylation.EGAX00001345080_9

BACK

SAMPLE K006395_K006408_20_lane_gembs LANE UMCG00023.Bisulfite-Seq.DNA_Methylation.EGAX00001345080_9

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 847250074 100.00 % 423625037 100.00 % 423625037 100.00 %
General Reads 827207590 97.63 % 415126133 97.99 % 412081457 97.28 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4825880 0.57 % 2419299 0.57 % 2406581 0.57 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 15216604 1.80 % 6079605 1.44 % 9136999 2.16 %
Bisulfite_reads C2T 425470473 50.22 % 213499514 50.40 % 211970959 50.04 %
Bisulfite_reads G2A 406562997 47.99 % 204045918 48.17 % 202517079 47.81 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 354010788
Average Unique 83.57 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33425630707 38.68 % 12826339458 29.68 % 20599291249 47.67 %
Base Counts Overall C 9406382319 10.88 % 430377581 1.00 % 8976004738 20.77 %
Base Counts Overall G 9473865055 10.96 % 9064800486 20.98 % 409064569 0.95 %
Base Counts Overall T 33238858226 38.46 % 20456420887 47.34 % 12782437339 29.58 %
Base Counts Overall N 874771241 1.01 % 431815362 1.00 % 442955879 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989955847316083
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 404678303



Mapping Quality

Mapping Quality Histogram
UMCG00023.Bisulfite-Seq.DNA_Methylation.EGAX00001345080_9.mapq.png



Read Length

Read Length Reads
101 423625037
101 423625037



Insert Size Plot

Insert Size Histogram
UMCG00023.Bisulfite-Seq.DNA_Methylation.EGAX00001345080_9.isize.png