/EXTERNAL BLUEPRINT/mapping_coverage/K006395_K006408_20_lane_gembs
BACK
SAMPLE K006395_K006408_20_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1905424934 |
100% |
173389321775 |
100% |
| Mapped |
1888241140 |
99.10 % |
171653758581 |
99.00 % |
| Passed |
1559579662 |
81.85 % |
138458949303 |
79.85 % |
| NotPassed |
328661478 |
17.25 % |
33194809278 |
19.14 % |
| |
|
|
|
|
| LowMAPQ |
283147306 |
14.86 % |
28597877906 |
16.49 % |
| MateUnmapped |
17183794 |
0.90 % |
1735563194 |
1.00 % |
| Duplicate |
16295083 |
0.86 % |
1645803383 |
0.95 % |
| BadOrientation |
48 |
0.00 % |
4848 |
0.00 % |
| LargeInsertSize |
28836 |
0.00 % |
2912436 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
29190205 |
1.53 % |
2948210705 |
1.70 % |
| Unmapped |
17183794 |
0.90 % |
1735563194 |
1.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
157506935812 |
100% |
| Passed |
130215516115 |
82.67 % |
| Trimmed |
6831945966 |
4.34 % |
| Clipped |
166586692 |
0.11 % |
| Overlapping |
18881399817 |
11.99 % |
| LowQuality |
1411487222 |
0.90 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |