/EXTERNAL BLUEPRINT/methylation/K006395_K006408_20_lane_gembs
BACK
SAMPLE K006395_K006408_20_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26936173 |
24718597 |
91.77 % |
| NonRefCpG |
260348 |
195554 |
75.11 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6287967 |
11.83 % |
5710031 |
11.36 % |
46756 |
9.44 % |
25888 |
6.33 % |
| Intermediate (0.3-0.7) |
6504149 |
12.24 % |
5727337 |
11.39 % |
78557 |
15.87 % |
53707 |
13.14 % |
| Methylated (0.7-1) |
40362933 |
75.93 % |
38842697 |
77.25 % |
369774 |
74.69 % |
329124 |
80.53 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.890 |
|
0.890 |
|
0.880 |
|
0.890 |
|