/EXTERNAL BLUEPRINT/K006363_14_lane_gembs

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SAMPLE K006363_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1103519068 100.00 % 551759534 100.00 % 551759534 100.00 %
General Reads 1066435768 96.64 % 534974372 96.96 % 531461396 96.32 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 13571568 1.23 % 6802306 1.23 % 6769262 1.23 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23511732 2.13 % 9982856 1.81 % 13528876 2.45 %
Bisulfite_reads C2T 565255988 51.22 % 283571746 51.39 % 281684242 51.05 %
Bisulfite_reads G2A 514751348 46.65 % 258204932 46.80 % 256546416 46.50 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 429278817
Average Unique 77.80 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41045375950 36.47 % 16059622821 28.54 % 24985753129 44.40 %
Base Counts Overall C 14687685003 13.05 % 770332895 1.37 % 13917352108 24.73 %
Base Counts Overall G 14951557709 13.28 % 14195614486 25.22 % 755943223 1.34 %
Base Counts Overall T 40751793656 36.20 % 24697466062 43.88 % 16054327594 28.53 %
Base Counts Overall N 1122532618 1.00 % 556436204 0.99 % 566096414 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988272691500409
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 515485905



Mapping Quality

Mapping Quality Histogram
K006363_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006363_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S00E8W.Bisulfite-Seq.DNA_Methylation.EGAX00001301750_14