/EXTERNAL BLUEPRINT/mapping_coverage/K006363_14_lane_gembs
BACK
SAMPLE K006363_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1046509638 |
100% |
91916950102 |
100% |
| Mapped |
1036435019 |
99.04 % |
90899413583 |
98.89 % |
| Passed |
814332882 |
77.81 % |
68467097746 |
74.49 % |
| NotPassed |
222102137 |
21.22 % |
22432315837 |
24.40 % |
| |
|
|
|
|
| LowMAPQ |
184909242 |
17.67 % |
18675833442 |
20.32 % |
| MateUnmapped |
10074619 |
0.96 % |
1017536519 |
1.11 % |
| Duplicate |
20027870 |
1.91 % |
2022814870 |
2.20 % |
| BadOrientation |
42 |
0.00 % |
4242 |
0.00 % |
| LargeInsertSize |
13910 |
0.00 % |
1404910 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17151073 |
1.64 % |
1732258373 |
1.88 % |
| Unmapped |
10074619 |
0.96 % |
1017536519 |
1.11 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82241906603 |
100% |
| Passed |
64388388975 |
78.29 % |
| Trimmed |
3451263110 |
4.20 % |
| Clipped |
113634611 |
0.14 % |
| Overlapping |
13661174246 |
16.61 % |
| LowQuality |
627445661 |
0.76 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |