/EXTERNAL BLUEPRINT/methylation/K006363_14_lane_gembs

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SAMPLE K006363_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26792959 21126631 78.85 %
NonRefCpG 328967 160969 48.93 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006363_14_lane_gembs_coverage_refCpG.png ./IMG//K006363_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006363_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006363_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006363_14_lane_gembs_quality_refcpg.png ./IMG//K006363_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006363_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6294526 12.72 % 4763927 11.22 % 110141 18.95 % 32720 8.86 %
Intermediate (0.3-0.7) 8016217 16.20 % 5796907 13.65 % 129122 22.22 % 64623 17.49 %
Methylated (0.7-1) 35171109 71.08 % 31901160 75.13 % 341962 58.83 % 272141 73.65 %
Median Methylation 0.840 0.860 0.770 0.850