/EXTERNAL BLUEPRINT/K006323_8_lane_gembs

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SAMPLE K006323_8_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 292655258 100.00 % 146327629 100.00 % 146327629 100.00 %
General Reads 288295722 98.51 % 145326156 99.32 % 142969566 97.71 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2 0.00 % 1 0.00 % 1 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4359534 1.49 % 1001472 0.68 % 3358062 2.29 %
Bisulfite_reads C2T 146852937 50.18 % 74003889 50.57 % 72849048 49.78 %
Bisulfite_reads G2A 141442787 48.33 % 71322268 48.74 % 70120519 47.92 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 121513499
Average Unique 83.04 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 11572855875 38.77 % 5199784110 34.84 % 6373071765 42.70 %
Base Counts Overall C 3109262791 10.42 % 149374488 1.00 % 2959888303 19.83 %
Base Counts Overall G 3112389646 10.43 % 2941843862 19.71 % 170545784 1.14 %
Base Counts Overall T 11714334435 39.24 % 6486366725 43.46 % 5227967710 35.03 %
Base Counts Overall N 341993569 1.15 % 148048973 0.99 % 193944596 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 138037488



Mapping Quality

Mapping Quality Histogram
K006323_8_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006323_8_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
329.2.Bisulfite-Seq.DNA_Methylation.EGAX00001223321_8