/EXTERNAL BLUEPRINT/mapping_coverage/K006323_8_lane_gembs
BACK
SAMPLE K006323_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
283773234 |
100% |
27301350975 |
100% |
| Mapped |
279986796 |
98.67 % |
26918920737 |
98.60 % |
| Passed |
235396241 |
82.95 % |
22415274682 |
82.10 % |
| NotPassed |
44590555 |
15.71 % |
4503646055 |
16.50 % |
| |
|
|
|
|
| LowMAPQ |
33096844 |
11.66 % |
3342781244 |
12.24 % |
| MateUnmapped |
3786438 |
1.33 % |
382430238 |
1.40 % |
| Duplicate |
4525103 |
1.59 % |
457035403 |
1.67 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
1552 |
0.00 % |
156752 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
6967046 |
2.46 % |
703671646 |
2.58 % |
| Unmapped |
3786438 |
1.33 % |
382430238 |
1.40 % |
Base Level Counts
| Bases |
# |
% |
| Total |
23709738183 |
100% |
| Passed |
20995132658 |
88.55 % |
| Trimmed |
1095680761 |
4.62 % |
| Clipped |
47479370 |
0.20 % |
| Overlapping |
1246984131 |
5.26 % |
| LowQuality |
324461263 |
1.37 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |