/EXTERNAL BLUEPRINT/methylation/K006323_8_lane_gembs

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SAMPLE K006323_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 23182438 3616555 15.60 %
NonRefCpG 371540 30374 8.18 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006323_8_lane_gembs_coverage_refCpG.png ./IMG//K006323_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006323_8_lane_gembs_coverage_nonRefCpG.png ./IMG//K006323_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006323_8_lane_gembs_quality_refcpg.png ./IMG//K006323_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006323_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3231836 9.45 % 333947 4.09 % 151117 26.28 % 12783 12.75 %
Intermediate (0.3-0.7) 10286213 30.06 % 1630855 19.99 % 179800 31.26 % 24290 24.22 %
Methylated (0.7-1) 20697750 60.49 % 6195212 75.92 % 244191 42.46 % 63198 63.03 %
Median Methylation 0.770 0.860 0.620 0.800