/EXTERNAL BLUEPRINT/methylation/K006427_18_lane_gembs

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SAMPLE K006427_18_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26809654 23331612 87.03 %
NonRefCpG 269524 185403 68.79 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006427_18_lane_gembs_coverage_refCpG.png ./IMG//K006427_18_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006427_18_lane_gembs_coverage_nonRefCpG.png ./IMG//K006427_18_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006427_18_lane_gembs_quality_refcpg.png ./IMG//K006427_18_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006427_18_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6234795 11.82 % 5268907 10.94 % 54696 10.66 % 22296 5.57 %
Intermediate (0.3-0.7) 7025121 13.32 % 5742911 11.92 % 86810 16.93 % 54164 13.53 %
Methylated (0.7-1) 39476404 74.86 % 37160478 77.14 % 371383 72.41 % 323975 80.91 %
Median Methylation 0.860 0.870 0.850 0.880