/EXTERNAL BLUEPRINT/K010529_1_lane_gembs

BACK

SAMPLE K010529_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 361015314 100.00 % 180507657 100.00 % 180507657 100.00 %
General Reads 351547263 97.38 % 176435669 97.74 % 175111594 97.01 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1489164 0.41 % 746576 0.41 % 742588 0.41 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7978887 2.21 % 3325412 1.84 % 4653475 2.58 %
Bisulfite_reads C2T 180851595 50.10 % 90760023 50.28 % 90091572 49.91 %
Bisulfite_reads G2A 172184832 47.69 % 86422222 47.88 % 85762610 47.51 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 147218524
Average Unique 81.56 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14303821909 38.84 % 5521924141 29.99 % 8781897768 47.70 %
Base Counts Overall C 3898681519 10.59 % 194912545 1.06 % 3703768974 20.12 %
Base Counts Overall G 3940457331 10.70 % 3753276040 20.39 % 187181291 1.02 %
Base Counts Overall T 14315400061 38.88 % 8760150684 47.58 % 5555249377 30.17 %
Base Counts Overall N 365201208 0.99 % 181517604 0.99 % 183683604 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988554324043292
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 169424970



Mapping Quality

Mapping Quality Histogram
K010529_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K010529_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010529_1798771_2