/EXTERNAL BLUEPRINT/mapping_coverage/K010529_1_lane_gembs
BACK
SAMPLE K010529_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
351051445 |
100% |
31992880297 |
100% |
| Mapped |
347702676 |
99.05 % |
31654654628 |
98.94 % |
| Passed |
294166534 |
83.80 % |
26247504286 |
82.04 % |
| NotPassed |
53536142 |
15.25 % |
5407150342 |
16.90 % |
| |
|
|
|
|
| LowMAPQ |
44946002 |
12.80 % |
4539546202 |
14.19 % |
| MateUnmapped |
3348769 |
0.95 % |
338225669 |
1.06 % |
| Duplicate |
496330 |
0.14 % |
50129330 |
0.16 % |
| BadOrientation |
14 |
0.00 % |
1414 |
0.00 % |
| LargeInsertSize |
1612 |
0.00 % |
162812 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
8092184 |
2.31 % |
817310584 |
2.55 % |
| Unmapped |
3348769 |
0.95 % |
338225669 |
1.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
29703178072 |
100% |
| Passed |
24634695417 |
82.94 % |
| Trimmed |
1290923347 |
4.35 % |
| Clipped |
39859312 |
0.13 % |
| Overlapping |
3415814474 |
11.50 % |
| LowQuality |
321885522 |
1.08 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |