/EXTERNAL BLUEPRINT/methylation/K010529_1_lane_gembs

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SAMPLE K010529_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25881879 7538686 29.13 %
NonRefCpG 314155 57585 18.33 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010529_1_lane_gembs_coverage_refCpG.png ./IMG//K010529_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010529_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010529_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010529_1_lane_gembs_quality_refcpg.png ./IMG//K010529_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010529_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5442085 11.14 % 496873 2.66 % 107104 18.42 % 5714 3.46 %
Intermediate (0.3-0.7) 13200511 27.02 % 3414480 18.28 % 167512 28.80 % 30824 18.65 %
Methylated (0.7-1) 30220031 61.85 % 14763681 79.06 % 306925 52.78 % 128753 77.89 %
Median Methylation 0.780 0.860 0.720 0.860