/EXTERNAL BLUEPRINT/K006415_14_lane_gembs

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SAMPLE K006415_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1233055192 100.00 % 616527596 100.00 % 616527596 100.00 %
General Reads 1202022936 97.48 % 603375630 97.87 % 598647306 97.10 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3275250 0.27 % 1642963 0.27 % 1632287 0.26 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27757006 2.25 % 11509003 1.87 % 16248003 2.64 %
Bisulfite_reads C2T 619282182 50.22 % 310832177 50.42 % 308450005 50.03 %
Bisulfite_reads G2A 586016004 47.53 % 294186416 47.72 % 291829588 47.33 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 499422609
Average Unique 81.01 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 48542748758 38.60 % 18584106197 29.55 % 29958642561 47.64 %
Base Counts Overall C 13789789295 10.96 % 678464265 1.08 % 13111325030 20.85 %
Base Counts Overall G 13846944639 11.01 % 13210609277 21.01 % 636335362 1.01 %
Base Counts Overall T 48339446483 38.43 % 29792365032 47.38 % 18547081451 29.49 %
Base Counts Overall N 1252700409 1.00 % 620270021 0.99 % 632430388 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991119958591343
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 579876025



Mapping Quality

Mapping Quality Histogram
K006415_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006415_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
B270.Bisulfite-Seq.DNA_Methylation.EGAX00001364650_14