/EXTERNAL BLUEPRINT/mapping_coverage/K006415_14_lane_gembs
BACK
SAMPLE K006415_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1198410835 |
100% |
109373794449 |
100% |
| Mapped |
1186718239 |
99.02 % |
108192842253 |
98.92 % |
| Passed |
996446273 |
83.15 % |
88975373687 |
81.35 % |
| NotPassed |
190271966 |
15.88 % |
19217468566 |
17.57 % |
| |
|
|
|
|
| LowMAPQ |
157495628 |
13.14 % |
15907058428 |
14.54 % |
| MateUnmapped |
11692596 |
0.98 % |
1180952196 |
1.08 % |
| Duplicate |
3614532 |
0.30 % |
365067732 |
0.33 % |
| BadOrientation |
18 |
0.00 % |
1818 |
0.00 % |
| LargeInsertSize |
6782 |
0.00 % |
684982 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
29155006 |
2.43 % |
2944655606 |
2.69 % |
| Unmapped |
11692596 |
0.98 % |
1180952196 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
100633874091 |
100% |
| Passed |
83460261833 |
82.93 % |
| Trimmed |
4375664640 |
4.35 % |
| Clipped |
130701371 |
0.13 % |
| Overlapping |
11527799033 |
11.46 % |
| LowQuality |
1139447214 |
1.13 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |