/EXTERNAL BLUEPRINT/methylation/K006415_14_lane_gembs

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SAMPLE K006415_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26844476 24060028 89.63 %
NonRefCpG 258960 193770 74.83 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006415_14_lane_gembs_coverage_refCpG.png ./IMG//K006415_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006415_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006415_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006415_14_lane_gembs_quality_refcpg.png ./IMG//K006415_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006415_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6212496 11.73 % 5323480 10.81 % 40447 8.21 % 18847 4.68 %
Intermediate (0.3-0.7) 7340918 13.86 % 6312309 12.81 % 81936 16.64 % 54995 13.64 %
Methylated (0.7-1) 39409141 74.41 % 37625019 76.38 % 370004 75.14 % 329296 81.68 %
Median Methylation 0.850 0.860 0.850 0.870