/EXTERNAL BLUEPRINT/K006372_8_lane_gembs

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SAMPLE K006372_8_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1232894578 100.00 % 616447289 100.00 % 616447289 100.00 %
General Reads 1198329845 97.20 % 602796975 97.79 % 595532870 96.61 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5956404 0.48 % 2994906 0.49 % 2961498 0.48 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 28608329 2.32 % 10655408 1.73 % 17952921 2.91 %
Bisulfite_reads C2T 617626342 50.10 % 310658048 50.39 % 306968294 49.80 %
Bisulfite_reads G2A 586659907 47.58 % 295133833 47.88 % 291526074 47.29 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 506996759
Average Unique 82.24 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 48591273914 38.64 % 18768580349 29.85 % 29822693565 47.43 %
Base Counts Overall C 13537761460 10.77 % 653737481 1.04 % 12884023979 20.49 %
Base Counts Overall G 13716699177 10.91 % 13094820800 20.83 % 621878377 0.99 %
Base Counts Overall T 48382052960 38.47 % 29713743881 47.26 % 18668309079 29.69 %
Base Counts Overall N 1527459445 1.21 % 646740967 1.03 % 880718478 1.40 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992414034991317
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 584389424



Mapping Quality

Mapping Quality Histogram
K006372_8_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006372_8_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S01E8O.Bisulfite-Seq.DNA_Methylation.EGAX00001340588_8