/EXTERNAL BLUEPRINT/mapping_coverage/K006372_8_lane_gembs
BACK
SAMPLE K006372_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1195549812 |
100% |
110466586059 |
100% |
| Mapped |
1180896613 |
98.77 % |
108986612960 |
98.66 % |
| Passed |
1009537689 |
84.44 % |
91679361636 |
82.99 % |
| NotPassed |
171358924 |
14.33 % |
17307251324 |
15.67 % |
| |
|
|
|
|
| LowMAPQ |
149925744 |
12.54 % |
15142500144 |
13.71 % |
| MateUnmapped |
14653199 |
1.23 % |
1479973099 |
1.34 % |
| Duplicate |
2780346 |
0.23 % |
280814946 |
0.25 % |
| BadOrientation |
16 |
0.00 % |
1616 |
0.00 % |
| LargeInsertSize |
4862 |
0.00 % |
491062 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
18647956 |
1.56 % |
1883443556 |
1.70 % |
| Unmapped |
14653199 |
1.23 % |
1479973099 |
1.34 % |
Base Level Counts
| Bases |
# |
% |
| Total |
101955101450 |
100% |
| Passed |
86170526334 |
84.52 % |
| Trimmed |
4451049685 |
4.37 % |
| Clipped |
127989838 |
0.13 % |
| Overlapping |
10147749976 |
9.95 % |
| LowQuality |
1057785617 |
1.04 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |