/EXTERNAL BLUEPRINT/methylation/K006372_8_lane_gembs

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SAMPLE K006372_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26883107 24361214 90.62 %
NonRefCpG 257273 197825 76.89 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006372_8_lane_gembs_coverage_refCpG.png ./IMG//K006372_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006372_8_lane_gembs_coverage_nonRefCpG.png ./IMG//K006372_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006372_8_lane_gembs_quality_refcpg.png ./IMG//K006372_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006372_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5810885 10.95 % 4974884 10.02 % 35344 7.22 % 16101 3.95 %
Intermediate (0.3-0.7) 6770438 12.76 % 5848084 11.78 % 74822 15.28 % 50125 12.30 %
Methylated (0.7-1) 40466473 76.28 % 38842259 78.21 % 379520 77.50 % 341459 83.76 %
Median Methylation 0.870 0.870 0.860 0.880