/EXTERNAL BLUEPRINT/K006416_14_lane_gembs

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SAMPLE K006416_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1198463242 100.00 % 599231621 100.00 % 599231621 100.00 %
General Reads 1169716588 97.60 % 587440479 98.03 % 582276109 97.17 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2805251 0.23 % 1407625 0.23 % 1397626 0.23 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25941403 2.16 % 10383517 1.73 % 15557886 2.60 %
Bisulfite_reads C2T 600931945 50.14 % 301763939 50.36 % 299168006 49.93 %
Bisulfite_reads G2A 571589894 47.69 % 287084165 47.91 % 284505729 47.48 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 494140939
Average Unique 82.46 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 47326251447 38.71 % 18213898510 29.80 % 29112352937 47.63 %
Base Counts Overall C 13222767503 10.82 % 638304040 1.04 % 12584463463 20.59 %
Base Counts Overall G 13297762032 10.88 % 12689049160 20.76 % 608712872 1.00 %
Base Counts Overall T 47119230491 38.55 % 28977914857 47.41 % 18141315634 29.68 %
Base Counts Overall N 1277239211 1.04 % 602458775 0.99 % 674780436 1.10 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990675532872306
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 569304221



Mapping Quality

Mapping Quality Histogram
K006416_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006416_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
B271.Bisulfite-Seq.DNA_Methylation.EGAX00001364651_14