/EXTERNAL BLUEPRINT/mapping_coverage/K006416_14_lane_gembs
BACK
SAMPLE K006416_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1165150460 |
100% |
107713379166 |
100% |
| Mapped |
1153474657 |
99.00 % |
106534123063 |
98.91 % |
| Passed |
983517219 |
84.41 % |
89368421825 |
82.97 % |
| NotPassed |
169957438 |
14.59 % |
17165701238 |
15.94 % |
| |
|
|
|
|
| LowMAPQ |
146220478 |
12.55 % |
14768268278 |
13.71 % |
| MateUnmapped |
11675803 |
1.00 % |
1179256103 |
1.09 % |
| Duplicate |
4567417 |
0.39 % |
461309117 |
0.43 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
4892 |
0.00 % |
494092 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19164641 |
1.64 % |
1935628741 |
1.80 % |
| Unmapped |
11675803 |
1.00 % |
1179256103 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
99326571905 |
100% |
| Passed |
83852463908 |
84.42 % |
| Trimmed |
4362100031 |
4.39 % |
| Clipped |
123915771 |
0.12 % |
| Overlapping |
9834234309 |
9.90 % |
| LowQuality |
1153857886 |
1.16 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |