/EXTERNAL BLUEPRINT/methylation/K006416_14_lane_gembs

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SAMPLE K006416_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26829766 23894993 89.06 %
NonRefCpG 277903 212340 76.41 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006416_14_lane_gembs_coverage_refCpG.png ./IMG//K006416_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006416_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006416_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006416_14_lane_gembs_quality_refcpg.png ./IMG//K006416_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006416_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6074607 11.48 % 5009924 10.22 % 39881 7.52 % 19423 4.41 %
Intermediate (0.3-0.7) 6761516 12.78 % 5735847 11.70 % 79776 15.05 % 53292 12.10 %
Methylated (0.7-1) 40087406 75.75 % 38281875 78.08 % 410446 77.43 % 367664 83.49 %
Median Methylation 0.870 0.870 0.870 0.880