/EXTERNAL BLUEPRINT/K006373_15_lane_gembs/MS49.Bisulfite-Seq.DNA_Methylation.EGAX00001343007_15

BACK

SAMPLE K006373_15_lane_gembs LANE MS49.Bisulfite-Seq.DNA_Methylation.EGAX00001343007_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1284052090 100.00 % 642026045 100.00 % 642026045 100.00 %
General Reads 1253215525 97.60 % 629062853 97.98 % 624152672 97.22 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5736611 0.45 % 2878091 0.45 % 2858520 0.45 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25099954 1.95 % 10085101 1.57 % 15014853 2.34 %
Bisulfite_reads C2T 643517360 50.12 % 322988069 50.31 % 320529291 49.92 %
Bisulfite_reads G2A 615434776 47.93 % 308952875 48.12 % 306481901 47.74 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 536342507
Average Unique 83.54 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 50813334004 38.80 % 19444149844 29.69 % 31369184160 47.90 %
Base Counts Overall C 14180326008 10.83 % 627167990 0.96 % 13553158018 20.70 %
Base Counts Overall G 14280511972 10.90 % 13674106655 20.88 % 606405317 0.93 %
Base Counts Overall T 50393741593 38.48 % 31088909768 47.47 % 19304831825 29.48 %
Base Counts Overall N 1305399603 1.00 % 652322333 1.00 % 653077270 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.999268215339926
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 612057715



Mapping Quality

Mapping Quality Histogram
MS49.Bisulfite-Seq.DNA_Methylation.EGAX00001343007_15.mapq.png



Read Length

Read Length Reads
101 642026045
101 642026045



Insert Size Plot

Insert Size Histogram
MS49.Bisulfite-Seq.DNA_Methylation.EGAX00001343007_15.isize.png