/EXTERNAL BLUEPRINT/mapping_coverage/K006373_15_lane_gembs
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SAMPLE K006373_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1250262959 |
100% |
114486249534 |
100% |
| Mapped |
1238651839 |
99.07 % |
113313526414 |
98.98 % |
| Passed |
1068800043 |
85.49 % |
96158495018 |
83.99 % |
| NotPassed |
169851796 |
13.59 % |
17155031396 |
14.98 % |
| |
|
|
|
|
| LowMAPQ |
147743704 |
11.82 % |
14922114104 |
13.03 % |
| MateUnmapped |
11611120 |
0.93 % |
1172723120 |
1.02 % |
| Duplicate |
2953767 |
0.24 % |
298330467 |
0.26 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
4364 |
0.00 % |
440764 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19149951 |
1.53 % |
1934145051 |
1.69 % |
| Unmapped |
11611120 |
0.93 % |
1172723120 |
1.02 % |
Base Level Counts
| Bases |
# |
% |
| Total |
107940992801 |
100% |
| Passed |
90255652340 |
83.62 % |
| Trimmed |
4710991104 |
4.36 % |
| Clipped |
126935998 |
0.12 % |
| Overlapping |
11655561785 |
10.80 % |
| LowQuality |
1191851574 |
1.10 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |